Variant report

Variant	rs7994032
Chromosome Location	chr13:92967546-92967547
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:92965487..92967711-chr13:92976361..92978926,2	K562	blood:
2	chr13:92962787..92965087-chr13:92966991..92969071,2	K562	blood:
3	chr13:92965451..92968338-chr13:92972669..92975627,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10162003	0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs11616708	0.96[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11616739	0.96[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs13378344	0.86[CHB][hapmap]
rs16947290	0.86[CHB][hapmap]
rs1887155	0.86[CHB][hapmap]
rs1887156	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926624	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1926628	0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs1926631	0.81[JPT][hapmap]
rs1926633	0.83[EUR][1000 genomes]
rs1926635	0.83[EUR][1000 genomes]
rs1926637	0.83[EUR][1000 genomes]
rs1926638	0.83[EUR][1000 genomes]
rs1926639	0.83[EUR][1000 genomes]
rs1926642	0.81[JPT][hapmap]
rs4085672	0.86[CHB][hapmap]
rs4338645	0.83[EUR][1000 genomes]
rs4771857	0.82[EUR][1000 genomes]
rs6492598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492604	0.82[EUR][1000 genomes]
rs716623	0.82[EUR][1000 genomes]
rs716624	0.82[EUR][1000 genomes]
rs7317136	0.80[CEU][hapmap]
rs7323550	0.82[EUR][1000 genomes]
rs7325768	0.82[EUR][1000 genomes]
rs7327328	0.96[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs7330825	0.82[EUR][1000 genomes]
rs7334109	0.81[JPT][hapmap]
rs7490525	0.82[EUR][1000 genomes]
rs7981777	0.83[EUR][1000 genomes]
rs7985916	0.81[JPT][hapmap]
rs7996497	0.82[EUR][1000 genomes]
rs7997136	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs8001201	0.93[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9284270	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301791	0.84[CEU][hapmap]
rs9301792	0.81[JPT][hapmap]
rs943286	0.86[CHB][hapmap]
rs9523597	0.84[CEU][hapmap]
rs9523630	0.83[EUR][1000 genomes]
rs9589492	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs9589493	0.86[CHB][hapmap]
rs9589494	0.86[CHB][hapmap]
rs9589506	0.83[EUR][1000 genomes]
rs9589512	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92966600-92967600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:92967400-92969400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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