Variant report

Variant	rs9301792
Chromosome Location	chr13:92953562-92953563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92951893..92954281-chr13:92957574..92960507,2	K562	blood:
2	chr13:92010436..92012496-chr13:92953050..92954701,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10162003	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13378505	0.85[CHB][hapmap]
rs1887156	0.83[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1926624	0.81[JPT][hapmap];0.81[TSI][hapmap]
rs1926629	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap]
rs1926631	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1926632	0.90[CHB][hapmap]
rs1926633	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1926635	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1926637	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1926638	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1926639	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1926640	0.90[CHB][hapmap]
rs1926641	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1926642	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs1926643	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1926644	0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs1926645	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1926646	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1926647	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1926650	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]
rs1926655	0.90[CHB][hapmap]
rs2148522	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182536	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs4338645	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4433679	0.81[CEU][hapmap]
rs4505184	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4508310	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4601908	0.95[CHB][hapmap]
rs4771856	0.90[CHB][hapmap]
rs4771857	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6492595	0.81[CEU][hapmap]
rs6492597	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap]
rs6492598	0.81[JPT][hapmap]
rs6492599	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs6492600	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs6492602	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6492603	0.90[CHB][hapmap]
rs6492604	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6492605	0.91[CHB][hapmap]
rs716623	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs716624	0.92[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7323550	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7325201	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7325768	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7330825	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7331847	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7332149	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7332756	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs7334109	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs7490525	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7981777	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7982677	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs7985663	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7985916	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs7994032	0.81[JPT][hapmap]
rs7996483	0.81[CEU][hapmap]
rs7996497	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7997136	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7998166	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs9284270	0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9284271	0.81[JPT][hapmap]
rs9301794	0.90[CHB][hapmap]
rs9301797	0.85[CHB][hapmap]
rs9516060	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs9516062	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9516063	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs9523630	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9584017	0.90[CHB][hapmap]
rs9584018	0.90[CHB][hapmap]
rs9584021	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs9584022	0.90[CHB][hapmap]
rs9584023	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9584024	0.90[CHB][hapmap]
rs9589486	0.82[ASN][1000 genomes]
rs9589502	0.90[CHB][hapmap]
rs9589504	0.90[CHB][hapmap]
rs9589506	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9589507	0.81[ASN][1000 genomes]
rs9589508	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs9589511	0.82[ASN][1000 genomes]
rs9589512	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9589513	0.82[ASN][1000 genomes]
rs9589522	0.90[CHB][hapmap]
rs9589523	0.95[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92952400-92953800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:92953200-92953600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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