Variant report

Variant	rs9584021
Chromosome Location	chr13:92989650-92989651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92983145..92985904-chr13:92987086..92990641,3	K562	blood:
2	chr13:92980924..92984645-chr13:92987086..92990340,3	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10162003	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs13378505	0.95[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap]
rs1887157	0.83[EUR][1000 genomes]
rs1926629	0.86[CHB][hapmap]
rs1926631	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1926632	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1926635	0.86[CHB][hapmap]
rs1926637	0.85[ASN][1000 genomes]
rs1926638	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1926639	0.86[CHB][hapmap]
rs1926640	0.94[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1926641	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1926642	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1926643	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1926644	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs1926645	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1926646	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1926647	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1926650	0.86[CHB][hapmap]
rs1926653	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1926655	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2148522	0.80[ASN][1000 genomes]
rs2182535	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2182536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35520935	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35801347	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4085672	0.82[GIH][hapmap];0.83[LWK][hapmap];0.90[TSI][hapmap]
rs4085673	0.91[EUR][1000 genomes]
rs4338645	0.86[CHB][hapmap]
rs4362255	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4505184	0.82[ASN][1000 genomes]
rs4508310	0.86[CHB][hapmap]
rs4601908	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4771856	0.81[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6492597	0.86[CHB][hapmap]
rs6492599	0.86[CHB][hapmap]
rs6492600	0.86[CHB][hapmap]
rs6492602	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs6492603	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6492605	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs716623	0.86[CHB][hapmap]
rs716624	0.85[CHB][hapmap]
rs7323550	0.82[ASN][1000 genomes]
rs7325201	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7332149	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7332756	0.90[CHB][hapmap]
rs7334109	0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs7490525	0.86[CHB][hapmap]
rs7981777	0.85[ASN][1000 genomes]
rs7982677	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs7985916	0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs7997136	0.91[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7998166	0.86[CHB][hapmap]
rs8001201	0.80[JPT][hapmap]
rs9301792	0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9301794	0.90[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9301797	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs9516060	0.86[CHB][hapmap]
rs9516062	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs9516063	0.86[CHB][hapmap]
rs9584017	0.84[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9584018	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9584020	0.81[AFR][1000 genomes]
rs9584022	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9584023	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs9584024	0.89[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9589492	0.85[JPT][hapmap]
rs9589502	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap]
rs9589504	0.81[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9589506	0.86[CHB][hapmap]
rs9589507	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9589508	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9589511	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9589512	0.84[ASN][1000 genomes]
rs9589513	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9589522	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs9589523	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv976279	chr13:92988323-92996254	Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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