Variant report

Variant	rs8001201
Chromosome Location	chr13:92969566-92969567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92968259..92969910-chr13:92996026..92998901,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1072917	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11616708	0.81[CHB][hapmap]
rs11616739	0.86[CHB][hapmap]
rs13378344	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs16947253	0.83[CHB][hapmap]
rs16947290	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs1887155	0.88[CEU][hapmap];0.93[CHB][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1887156	0.93[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs1926624	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs1926628	0.87[CHB][hapmap]
rs4085672	0.93[CHB][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6492598	0.93[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7327328	0.86[CHB][hapmap]
rs7982677	0.80[JPT][hapmap]
rs7994032	0.93[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9284270	0.93[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9284271	0.93[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs943286	0.93[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9584020	0.86[EUR][1000 genomes]
rs9584021	0.80[JPT][hapmap]
rs9589487	0.81[ASN][1000 genomes]
rs9589492	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9589493	0.88[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9589494	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs9589496	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs9589508	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92968000-92969800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:92968800-92970000	Enhancers	NH-A	brain
3	chr13:92969200-92969800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:92969400-92969800	Enhancers	Fetal Lung	lung
5	chr13:92969400-92970000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:92969400-92970000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:92969400-92970000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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