Variant report

Variant	rs9589523
Chromosome Location	chr13:93019602-93019603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93018970..93021048-chr13:93021164..93022779,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10162003	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13378505	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs1926629	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1926631	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1926632	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1926633	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926637	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1926638	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1926639	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926640	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1926641	0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap]
rs1926642	0.90[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs1926643	0.85[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs1926644	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1926645	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1926646	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs1926647	0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap]
rs1926650	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1926653	0.86[ASN][1000 genomes]
rs1926655	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2148522	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2182535	0.81[ASN][1000 genomes]
rs2182536	0.90[CHB][hapmap]
rs4338645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4505184	0.83[EUR][1000 genomes]
rs4508310	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4601908	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4771856	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4771857	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492600	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6492602	0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap]
rs6492603	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6492604	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492605	0.90[CHB][hapmap]
rs716623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs716624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7323550	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7325201	0.90[CHB][hapmap]
rs7325768	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7330825	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7331847	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7332149	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7332756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334109	0.90[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs7490525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7981777	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7982677	0.90[CHB][hapmap]
rs7985663	0.86[EUR][1000 genomes]
rs7985916	0.90[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs7996497	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7997136	0.95[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7998166	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9301792	0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9301794	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9301797	0.95[CHB][hapmap]
rs9516060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9516062	0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap]
rs9516063	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523630	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9584017	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9584018	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9584021	0.90[CHB][hapmap]
rs9584022	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9584023	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs9584024	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9589502	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9589504	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9589506	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9589508	0.90[CHB][hapmap]
rs9589512	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9589522	1.00[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900903	chr13:92999147-93043373	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv976254	chr13:93007578-93034690	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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