Variant report

Variant	rs9589504
Chromosome Location	chr13:92980315-92980316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92961385..92963031-chr13:92979111..92982076,2	K562	blood:
2	chr13:92970236..92973225-chr13:92975344..92980353,5	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10162003	0.90[CHB][hapmap]
rs13378344	0.81[JPT][hapmap]
rs13378505	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs16947290	0.81[JPT][hapmap]
rs1887155	0.81[JPT][hapmap]
rs1887157	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1926629	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1926631	0.90[CHB][hapmap]
rs1926632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926633	0.86[ASN][1000 genomes]
rs1926635	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1926638	0.90[CHB][hapmap]
rs1926639	0.95[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1926640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926641	0.85[CHB][hapmap]
rs1926642	0.85[CHB][hapmap]
rs1926644	0.85[CHB][hapmap]
rs1926645	0.85[CHB][hapmap]
rs1926646	0.85[CHB][hapmap]
rs1926647	0.85[CHB][hapmap]
rs1926650	0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs1926653	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1926655	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2182535	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182536	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs35520935	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35801347	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4085672	0.81[JPT][hapmap];0.85[TSI][hapmap]
rs4085673	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4338645	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4362255	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4508310	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs4601908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4771856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771857	0.86[ASN][1000 genomes]
rs6492597	0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs6492599	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs6492600	0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs6492602	0.85[CHB][hapmap]
rs6492603	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492604	0.86[ASN][1000 genomes]
rs6492605	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs716623	0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs716624	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7325201	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7325768	0.85[ASN][1000 genomes]
rs7330825	0.85[ASN][1000 genomes]
rs7332756	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7334109	0.85[CHB][hapmap]
rs7490525	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs7982677	1.00[ASW][hapmap];0.80[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs7985916	0.85[CHB][hapmap]
rs7996497	0.86[ASN][1000 genomes]
rs7997136	0.90[CHB][hapmap]
rs7998166	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs9301792	0.90[CHB][hapmap]
rs9301794	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9301797	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs943286	0.81[JPT][hapmap]
rs9516060	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs9516062	0.85[CHB][hapmap]
rs9516063	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs9523630	0.86[ASN][1000 genomes]
rs9584017	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9584018	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9584021	0.81[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9584022	0.81[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9584023	0.85[CHB][hapmap]
rs9584024	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9589493	0.85[JPT][hapmap]
rs9589494	0.81[JPT][hapmap]
rs9589496	0.85[JPT][hapmap]
rs9589502	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9589506	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9589507	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9589508	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9589511	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9589513	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9589522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs9589523	1.00[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv456068	chr13:92961151-93038913	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv562727	chr13:92961151-93038913	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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