Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10492502	0.91[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap]
rs12874185	0.88[GIH][hapmap]
rs12877870	0.88[GIH][hapmap]
rs13378344	0.87[CEU][hapmap]
rs16947189	0.90[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];0.90[LWK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16947253	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs16952627	1.00[CEU][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1887155	0.87[CEU][hapmap]
rs28800355	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4085672	1.00[CEU][hapmap]
rs6492593	0.88[GIH][hapmap]
rs72638628	0.84[EUR][1000 genomes]
rs7984662	0.88[GIH][hapmap]
rs7993595	0.98[GIH][hapmap]
rs943286	0.93[CEU][hapmap]
rs9523597	0.83[GIH][hapmap];0.84[LWK][hapmap]
rs9589468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9589484	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9589487	0.87[EUR][1000 genomes]
rs9589492	0.93[CEU][hapmap]
rs9589493	0.87[CEU][hapmap]
rs9589494	0.87[CEU][hapmap]
rs9589496	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92917200-92918200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:92917600-92919000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:92917600-92919000	Enhancers	HUES48 Cell Line	embryonic stem cell

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