Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10492502	0.81[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs12874185	0.86[MEX][hapmap]
rs12877870	0.86[MEX][hapmap]
rs13378344	0.85[CEU][hapmap]
rs16947195	0.81[JPT][hapmap]
rs16947253	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap]
rs16952627	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1887155	0.85[CEU][hapmap]
rs28800355	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4085672	1.00[CEU][hapmap]
rs6492593	0.86[MEX][hapmap]
rs72638628	0.82[EUR][1000 genomes]
rs7984662	0.86[MEX][hapmap]
rs7993595	0.84[GIH][hapmap];0.86[MEX][hapmap]
rs943286	0.92[CEU][hapmap]
rs9523597	0.81[JPT][hapmap];0.86[MEX][hapmap]
rs9589468	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9589470	0.90[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];0.90[LWK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9589471	0.81[JPT][hapmap]
rs9589484	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9589487	0.85[EUR][1000 genomes]
rs9589492	0.92[CEU][hapmap]
rs9589493	0.85[CEU][hapmap]
rs9589494	0.85[CEU][hapmap]
rs9589496	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92912800-92917600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:92914200-92915000	Enhancers	Colon Smooth Muscle	Colon

Quick Search: