Variant report

Variant	rs2153911
Chromosome Location	chr6:71741854-71741855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1014877	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs13210433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404036	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6455400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924920	0.88[AFR][1000 genomes]
rs6925100	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6929275	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7767485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342806	0.85[EUR][1000 genomes]
rs9346418	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346419	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351799	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360434	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2153911	COL19A1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71740000-71744600	Enhancers	Fetal Lung	lung
2	chr6:71741200-71742000	Enhancers	Placenta	Placenta
3	chr6:71741400-71742400	Enhancers	HepG2	liver
4	chr6:71741400-71746200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:71741600-71742000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:71741600-71745400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:71741600-71745400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:71741800-71742000	Enhancers	Brain Anterior Caudate	brain
9	chr6:71741800-71742200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:71741800-71742200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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