Variant report

Variant	rs6455402
Chromosome Location	chr6:71741283-71741284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1014877	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs13210433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342761	0.80[AFR][1000 genomes]
rs2153911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404036	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6455400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455401	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924920	0.90[AFR][1000 genomes]
rs6925100	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6929275	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7767485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342806	0.85[EUR][1000 genomes]
rs9346418	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346419	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351799	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360434	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6455402	COL19A1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71738800-71741800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:71739600-71741600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:71739600-71741600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:71739800-71741400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:71740000-71744600	Enhancers	Fetal Lung	lung
6	chr6:71741200-71742000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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