Variant report

Variant	rs1342761
Chromosome Location	chr6:71750120-71750121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1014877	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11759339	1.00[CHB][hapmap]
rs16869607	1.00[CHB][hapmap]
rs62404036	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6455400	0.80[AFR][1000 genomes]
rs6455402	0.80[AFR][1000 genomes]
rs6907179	1.00[CHB][hapmap]
rs6911809	1.00[CHB][hapmap]
rs6924920	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6925100	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6929275	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7774025	1.00[CHB][hapmap]
rs9346419	0.80[AFR][1000 genomes]
rs9351800	0.87[EUR][1000 genomes]
rs9354961	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1342761	COL19A1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71745400-71754800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:71748600-71750400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:71748600-71750400	Enhancers	Brain Germinal Matrix	brain
4	chr6:71749600-71750400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:71749600-71750400	Enhancers	Fetal Brain Female	brain
6	chr6:71749600-71753800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:71749800-71750200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:71749800-71750200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:71749800-71750200	Enhancers	Brain Anterior Caudate	brain
10	chr6:71749800-71750400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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