Variant report

Variant	rs1014877
Chromosome Location	chr6:71746178-71746179
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13210433	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1342761	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2153911	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62404036	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6455400	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6455401	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6455402	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6924920	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6925100	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6929275	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7767485	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9342806	0.83[EUR][1000 genomes]
rs9346418	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9346419	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9351799	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9360434	0.86[EUR][1000 genomes]
rs9455303	0.80[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71741400-71746200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:71744600-71748200	Weak transcription	Fetal Lung	lung
3	chr6:71745200-71748200	Weak transcription	Hela-S3	cervix
4	chr6:71745200-71748600	Weak transcription	Brain Germinal Matrix	brain
5	chr6:71745200-71749800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:71745400-71754800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:71745600-71746200	Enhancers	Fetal Thymus	thymus
8	chr6:71746000-71746200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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