Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10400305	1.00[CHB][hapmap]
rs10792093	0.86[ASN][1000 genomes]
rs10896598	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10896604	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs10896608	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10896613	0.86[ASN][1000 genomes]
rs11228973	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228991	0.90[EUR][1000 genomes]
rs11228997	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap]
rs11229017	0.86[ASN][1000 genomes]
rs11606862	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12272063	0.86[ASN][1000 genomes]
rs12361969	0.82[EUR][1000 genomes]
rs12364724	0.83[EUR][1000 genomes]
rs2155233	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518272	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668408	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67221365	0.86[ASN][1000 genomes]
rs7102952	0.86[ASN][1000 genomes]
rs7107352	0.86[ASN][1000 genomes]
rs7111339	1.00[CEU][hapmap]
rs7129491	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7130847	0.85[YRI][hapmap]
rs73470506	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57037200-57042200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:57037400-57041400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:57041000-57042600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:57041200-57041400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr11:57041200-57042800	Weak transcription	Spleen	Spleen
6	chr11:57041200-57043200	Enhancers	NHEK	skin

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