Variant report

Variant	rs2157498
Chromosome Location	chr6:12186797-12186798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs219938	1.00[ASN][1000 genomes]
rs219939	1.00[ASN][1000 genomes]
rs219947	1.00[ASN][1000 genomes]
rs219962	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56938888	1.00[ASN][1000 genomes]
rs57691377	1.00[ASN][1000 genomes]
rs58790093	1.00[ASN][1000 genomes]
rs58853119	1.00[ASN][1000 genomes]
rs59856455	1.00[ASN][1000 genomes]
rs60767400	1.00[ASN][1000 genomes]
rs60883877	1.00[ASN][1000 genomes]
rs61374931	1.00[ASN][1000 genomes]
rs61432409	1.00[ASN][1000 genomes]
rs7775270	1.00[ASN][1000 genomes]
rs9470951	1.00[ASN][1000 genomes]
rs9470991	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12176200-12203400	Weak transcription	A549	lung
2	chr6:12185800-12200800	Weak transcription	Aorta	Aorta
3	chr6:12186600-12187000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:12186600-12187800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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