Variant report

Variant	rs60767400
Chromosome Location	chr6:12126248-12126249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1205851	1.00[ASN][1000 genomes]
rs1205878	1.00[ASN][1000 genomes]
rs1205885	1.00[ASN][1000 genomes]
rs182357	1.00[ASN][1000 genomes]
rs1988815	1.00[ASN][1000 genomes]
rs209802	1.00[ASN][1000 genomes]
rs209803	1.00[ASN][1000 genomes]
rs209819	1.00[ASN][1000 genomes]
rs2157498	1.00[ASN][1000 genomes]
rs219938	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219939	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs219962	1.00[ASN][1000 genomes]
rs220019	0.92[AMR][1000 genomes]
rs28601679	1.00[ASN][1000 genomes]
rs56774672	1.00[ASN][1000 genomes]
rs56938888	1.00[ASN][1000 genomes]
rs57103791	1.00[ASN][1000 genomes]
rs57691377	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58790093	1.00[ASN][1000 genomes]
rs58853119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59856455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60883877	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61374931	1.00[ASN][1000 genomes]
rs61432409	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6904014	1.00[ASN][1000 genomes]
rs73724310	1.00[ASN][1000 genomes]
rs7775270	1.00[ASN][1000 genomes]
rs9470951	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470991	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12116000-12128000	Weak transcription	Fetal Heart	heart
3	chr6:12117200-12136800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:12118400-12138400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:12118800-12131400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:12119400-12129800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:12119600-12126800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:12119800-12138800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:12120000-12128800	Strong transcription	Liver	Liver
10	chr6:12120200-12129000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:12120400-12126600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:12120400-12128200	Strong transcription	HSMM	muscle
13	chr6:12120400-12129000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:12121400-12128000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:12121400-12128000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:12121400-12150200	Weak transcription	Fetal Brain Male	brain
17	chr6:12121600-12136800	Weak transcription	Hela-S3	cervix
18	chr6:12122000-12134600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:12122000-12136600	Weak transcription	Osteobl	bone
20	chr6:12122000-12138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:12122200-12128400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:12122200-12132200	Weak transcription	A549	lung
23	chr6:12122200-12132200	Weak transcription	NHLF	lung
24	chr6:12122200-12137600	Weak transcription	Brain Anterior Caudate	brain
25	chr6:12122200-12137600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:12122200-12137600	Weak transcription	Brain Substantia Nigra	brain
27	chr6:12122200-12137800	Weak transcription	HMEC	breast
28	chr6:12122200-12138600	Weak transcription	Colonic Mucosa	Colon
29	chr6:12122200-12138600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:12122200-12138600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:12122200-12138800	Weak transcription	Ovary	ovary
32	chr6:12122200-12138800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:12122200-12139000	Weak transcription	Spleen	Spleen
34	chr6:12122200-12139200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:12122200-12161800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:12122400-12126800	Strong transcription	GM12878-XiMat	blood
37	chr6:12122400-12130600	Weak transcription	Pancreas	Pancrea
38	chr6:12122400-12136400	Weak transcription	Small Intestine	intestine
39	chr6:12122400-12138200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:12122400-12138600	Weak transcription	Lung	lung
41	chr6:12122400-12139200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:12122400-12139200	Weak transcription	Placenta	Placenta
43	chr6:12122400-12139800	Weak transcription	Esophagus	oesophagus
44	chr6:12122600-12136000	Weak transcription	Fetal Lung	lung
45	chr6:12122600-12138200	Weak transcription	Primary B cells from cord blood	blood
46	chr6:12122600-12139000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:12122800-12126600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:12122800-12128400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:12122800-12130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:12122800-12130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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