Variant report
| Variant | rs1205885 |
|---|---|
| Chromosome Location | chr6:11947955-11947956 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:11942314..11946137-chr6:11947181..11949367,4 | K562 | blood: | |
| 2 | chr6:11947439..11949235-chr6:11953867..11956602,2 | K562 | blood: | |
| 3 | chr6:11947667..11952733-chr6:12010159..12014739,6 | K562 | blood: | |
| 4 | chr6:11947385..11949029-chr6:11979170..11980686,2 | K562 | blood: | |
| 5 | chr6:11945990..11949036-chr6:11950804..11953646,3 | K562 | blood: | |
| 6 | chr6:11947667..11952221-chr6:12010159..12014739,5 | K562 | blood: | |
| 7 | chr6:11928396..11930237-chr6:11946465..11949444,2 | K562 | blood: | |
| 8 | chr6:11946393..11948154-chr6:11992265..11994588,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000095951 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1205851 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1205878 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs182357 | 1.00[ASN][1000 genomes] |
| rs1988815 | 1.00[ASN][1000 genomes] |
| rs209802 | 1.00[ASN][1000 genomes] |
| rs209803 | 1.00[ASN][1000 genomes] |
| rs209819 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs219938 | 1.00[ASN][1000 genomes] |
| rs219939 | 1.00[ASN][1000 genomes] |
| rs28601679 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56774672 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56938888 | 1.00[ASN][1000 genomes] |
| rs57103791 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57691377 | 1.00[ASN][1000 genomes] |
| rs58790093 | 1.00[ASN][1000 genomes] |
| rs58803877 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58853119 | 1.00[ASN][1000 genomes] |
| rs59664321 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59856455 | 1.00[ASN][1000 genomes] |
| rs60767400 | 1.00[ASN][1000 genomes] |
| rs60883877 | 1.00[ASN][1000 genomes] |
| rs61374931 | 1.00[ASN][1000 genomes] |
| rs61432409 | 1.00[ASN][1000 genomes] |
| rs6904014 | 1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73724310 | 1.00[ASN][1000 genomes] |
| rs7775270 | 1.00[ASN][1000 genomes] |
| rs9470951 | 1.00[ASN][1000 genomes] |
| rs9470991 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11946800-11948000 | Enhancers | K562 | blood |
| 2 | chr6:11947800-11948000 | Enhancers | Liver | Liver |
