Variant report

Variant	rs59664321
Chromosome Location	chr6:11921610-11921611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
2	chr6:11920219..11922474-chr6:11929481..11931505,4	K562	blood:
3	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
4	chr6:11916020..11917550-chr6:11921352..11923792,2	K562	blood:
5	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
6	chr6:11916050..11918300-chr6:11921352..11923216,2	K562	blood:
7	chr6:11919166..11921796-chr6:11941953..11944553,2	K562	blood:
8	chr6:11920056..11922933-chr6:11926115..11927726,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1205851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205878	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1205885	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182357	1.00[ASN][1000 genomes]
rs1988815	1.00[ASN][1000 genomes]
rs209802	1.00[ASN][1000 genomes]
rs209803	1.00[ASN][1000 genomes]
rs209819	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28601679	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56774672	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56938888	1.00[ASN][1000 genomes]
rs57103791	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57691377	1.00[ASN][1000 genomes]
rs58790093	1.00[ASN][1000 genomes]
rs58803877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61374931	1.00[ASN][1000 genomes]
rs61432409	1.00[ASN][1000 genomes]
rs6904014	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73724310	1.00[ASN][1000 genomes]
rs7775270	1.00[ASN][1000 genomes]
rs9470951	1.00[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11918000-11922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:11918200-11921800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:11918200-11921800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:11918200-11922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:11918200-11922200	Enhancers	HSMMtube	muscle
6	chr6:11918400-11922400	Enhancers	NHEK	skin
7	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:11919000-11922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:11919400-11922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:11919400-11922200	Enhancers	Hela-S3	cervix
11	chr6:11919400-11922200	Enhancers	NHDF-Ad	bronchial
12	chr6:11919400-11922200	Enhancers	NHLF	lung
13	chr6:11919400-11924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:11920400-11921800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:11920600-11922200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:11920800-11922200	Enhancers	Fetal Intestine Large	intestine
19	chr6:11920800-11922200	Enhancers	HMEC	breast
20	chr6:11920800-11922200	Enhancers	HSMM	muscle
21	chr6:11920800-11922200	Enhancers	NH-A	brain
22	chr6:11920800-11922400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:11920800-11922400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:11920800-11922400	Enhancers	Osteobl	bone
25	chr6:11921000-11921800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr6:11921000-11921800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:11921000-11922000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:11921000-11922200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:11921000-11922400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:11921200-11921800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:11921200-11921800	Enhancers	Fetal Muscle Leg	muscle
32	chr6:11921200-11921800	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr6:11921200-11922000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:11921200-11922200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:11921200-11922200	Flanking Active TSS	K562	blood
36	chr6:11921200-11923400	Enhancers	Fetal Lung	lung
37	chr6:11921400-11921800	Flanking Active TSS	A549	lung
38	chr6:11921600-11921800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:11921600-11926000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:11921600-11926000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:11921600-11926200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:11921600-11926200	Weak transcription	Esophagus	oesophagus
43	chr6:11921600-11938600	Weak transcription	Right Atrium	heart

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