Variant report
| Variant | rs1205878 |
|---|---|
| Chromosome Location | chr6:11946306-11946307 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1205851 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1205885 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs182357 | 1.00[ASN][1000 genomes] |
| rs1988815 | 1.00[ASN][1000 genomes] |
| rs209802 | 1.00[ASN][1000 genomes] |
| rs209803 | 1.00[ASN][1000 genomes] |
| rs209819 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs219938 | 1.00[ASN][1000 genomes] |
| rs219939 | 1.00[ASN][1000 genomes] |
| rs28601679 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56774672 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56938888 | 1.00[ASN][1000 genomes] |
| rs57103791 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57691377 | 1.00[ASN][1000 genomes] |
| rs58790093 | 1.00[ASN][1000 genomes] |
| rs58803877 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58853119 | 1.00[ASN][1000 genomes] |
| rs59664321 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59856455 | 1.00[ASN][1000 genomes] |
| rs60767400 | 1.00[ASN][1000 genomes] |
| rs60883877 | 1.00[ASN][1000 genomes] |
| rs61374931 | 1.00[ASN][1000 genomes] |
| rs61432409 | 1.00[ASN][1000 genomes] |
| rs6904014 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73724310 | 1.00[ASN][1000 genomes] |
| rs7775270 | 1.00[ASN][1000 genomes] |
| rs9470951 | 1.00[ASN][1000 genomes] |
| rs9470991 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2427616 | chr6:11945409-11946714 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11944600-11946800 | Weak transcription | K562 | blood |
| 2 | chr6:11946000-11947800 | Weak transcription | Liver | Liver |
