Variant report
| Variant | rs56774672 |
|---|---|
| Chromosome Location | chr6:11950781-11950782 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:11940312..11942234-chr6:11949542..11951160,2 | K562 | blood: | |
| 2 | chr6:11947667..11952733-chr6:12010159..12014739,6 | K562 | blood: | |
| 3 | chr6:11943808..11945567-chr6:11950046..11952634,2 | K562 | blood: | |
| 4 | chr6:11947667..11952221-chr6:12010159..12014739,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000095951 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1205851 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1205878 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1205885 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs182357 | 1.00[ASN][1000 genomes] |
| rs1988815 | 1.00[ASN][1000 genomes] |
| rs209802 | 1.00[ASN][1000 genomes] |
| rs209803 | 1.00[ASN][1000 genomes] |
| rs209819 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs219938 | 1.00[ASN][1000 genomes] |
| rs219939 | 1.00[ASN][1000 genomes] |
| rs28601679 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56938888 | 1.00[ASN][1000 genomes] |
| rs57103791 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57691377 | 1.00[ASN][1000 genomes] |
| rs58790093 | 1.00[ASN][1000 genomes] |
| rs58803877 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58853119 | 1.00[ASN][1000 genomes] |
| rs59664321 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59856455 | 1.00[ASN][1000 genomes] |
| rs60767400 | 1.00[ASN][1000 genomes] |
| rs60883877 | 1.00[ASN][1000 genomes] |
| rs61374931 | 1.00[ASN][1000 genomes] |
| rs61432409 | 1.00[ASN][1000 genomes] |
| rs6904014 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73724310 | 1.00[ASN][1000 genomes] |
| rs7775270 | 1.00[ASN][1000 genomes] |
| rs9470951 | 1.00[ASN][1000 genomes] |
| rs9470991 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11949800-11951600 | Enhancers | K562 | blood |
