Variant report
| Variant | rs73724310 |
|---|---|
| Chromosome Location | chr6:11955642-11955643 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:11954299..11955841-chr6:12011068..12013010,2 | K562 | blood: | |
| 2 | chr6:11947439..11949235-chr6:11953867..11956602,2 | K562 | blood: | |
| 3 | chr6:11937988..11940263-chr6:11954946..11957643,2 | K562 | blood: | |
| 4 | chr6:11951766..11953426-chr6:11954045..11956144,3 | K562 | blood: | |
| 5 | chr6:11952838..11955991-chr6:12007401..12009737,3 | K562 | blood: | |
| 6 | chr6:11943872..11945567-chr6:11954478..11956491,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229896 | Chromatin interaction |
| ENSG00000095951 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1205851 | 1.00[ASN][1000 genomes] |
| rs1205878 | 1.00[ASN][1000 genomes] |
| rs1205885 | 1.00[ASN][1000 genomes] |
| rs182357 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1988815 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs209801 | 0.89[AFR][1000 genomes] |
| rs209802 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs209803 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs209819 | 1.00[ASN][1000 genomes] |
| rs219938 | 1.00[ASN][1000 genomes] |
| rs219939 | 1.00[ASN][1000 genomes] |
| rs28601679 | 1.00[ASN][1000 genomes] |
| rs56774672 | 1.00[ASN][1000 genomes] |
| rs56938888 | 1.00[ASN][1000 genomes] |
| rs57103791 | 1.00[ASN][1000 genomes] |
| rs57691377 | 1.00[ASN][1000 genomes] |
| rs58790093 | 1.00[ASN][1000 genomes] |
| rs58803877 | 1.00[ASN][1000 genomes] |
| rs58853119 | 1.00[ASN][1000 genomes] |
| rs59664321 | 1.00[ASN][1000 genomes] |
| rs59856455 | 1.00[ASN][1000 genomes] |
| rs60767400 | 1.00[ASN][1000 genomes] |
| rs60883877 | 1.00[ASN][1000 genomes] |
| rs61374931 | 1.00[ASN][1000 genomes] |
| rs61432409 | 1.00[ASN][1000 genomes] |
| rs6904014 | 1.00[ASN][1000 genomes] |
| rs7775270 | 1.00[ASN][1000 genomes] |
| rs9470951 | 1.00[ASN][1000 genomes] |
| rs9470991 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11955400-11958800 | Weak transcription | K562 | blood |
