Variant report

Variant	rs2164783
Chromosome Location	chr11:16373285-16373286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16932966	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1827535	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2118362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34866095	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35603256	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7109139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7127006	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932056	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7933830	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
2	chr11:16367000-16376400	Weak transcription	HepG2	liver
3	chr11:16368800-16374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:16369000-16375000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:16369800-16374400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16369800-16375000	Weak transcription	Fetal Intestine Large	intestine
7	chr11:16370000-16374200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:16370000-16375200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16370000-16375800	Weak transcription	Fetal Heart	heart
10	chr11:16370400-16374400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:16370600-16373800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:16370600-16373800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:16372000-16374400	Weak transcription	K562	blood
14	chr11:16372200-16377400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:16372400-16374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:16372800-16373400	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links