Variant report

Variant	rs7109376
Chromosome Location	chr11:16372431-16372432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16370189..16372518-chr11:16626510..16628884,2	K562	blood:
2	chr11:16370053..16372809-chr11:16622529..16624402,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11023926	1.00[ASN][1000 genomes]
rs12417996	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12418276	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12418887	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12420134	1.00[ASN][1000 genomes]
rs12420808	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12791361	1.00[CHB][hapmap]
rs12800654	1.00[CHB][hapmap]
rs1437635	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16932966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17461712	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17538814	1.00[CHB][hapmap]
rs17552977	1.00[CHB][hapmap]
rs17553733	1.00[ASN][1000 genomes]
rs1827535	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2118362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34281980	1.00[ASN][1000 genomes]
rs34866095	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35603256	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881739	1.00[ASN][1000 genomes]
rs61881740	1.00[ASN][1000 genomes]
rs61881741	1.00[ASN][1000 genomes]
rs61881743	1.00[ASN][1000 genomes]
rs61881745	1.00[ASN][1000 genomes]
rs61883178	1.00[ASN][1000 genomes]
rs61883179	1.00[ASN][1000 genomes]
rs61883180	1.00[ASN][1000 genomes]
rs61883181	1.00[ASN][1000 genomes]
rs61883182	1.00[ASN][1000 genomes]
rs61883184	1.00[ASN][1000 genomes]
rs61883185	1.00[ASN][1000 genomes]
rs61883187	1.00[ASN][1000 genomes]
rs61883197	1.00[ASN][1000 genomes]
rs7109139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127006	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722747	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72869952	1.00[ASN][1000 genomes]
rs7929530	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7932056	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7933830	0.95[CEU][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936866	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs931774	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
2	chr11:16367000-16376400	Weak transcription	HepG2	liver
3	chr11:16368800-16374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:16369000-16375000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:16369800-16372800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16369800-16374400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16369800-16375000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16370000-16374200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:16370000-16375200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16370000-16375800	Weak transcription	Fetal Heart	heart
11	chr11:16370400-16374400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:16370600-16373800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:16370600-16373800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:16372000-16374400	Weak transcription	K562	blood
15	chr11:16372200-16377400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:16372400-16374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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