Variant report

Variant	rs61883178
Chromosome Location	chr11:16317779-16317780
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16317353..16319622-chr11:16356044..16358376,2	K562	blood:
2	chr11:16306276..16308117-chr11:16316163..16319101,2	K562	blood:
3	chr11:16316414..16318651-chr11:16625484..16627197,2	K562	blood:
4	chr11:16312308..16315200-chr11:16317482..16320293,3	K562	blood:
5	chr11:16315419..16322751-chr11:16322783..16327004,9	K562	blood:
6	chr11:16316414..16319382-chr11:16625484..16628064,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11023926	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12417996	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418276	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418887	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420134	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420808	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437635	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932966	1.00[ASN][1000 genomes]
rs17461712	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17552977	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17553733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827535	1.00[ASN][1000 genomes]
rs1975299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118362	1.00[ASN][1000 genomes]
rs34281980	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34866095	1.00[ASN][1000 genomes]
rs35603256	1.00[ASN][1000 genomes]
rs61881739	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61881740	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881741	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881743	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881745	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883184	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883185	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883187	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883197	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109139	1.00[ASN][1000 genomes]
rs7109376	1.00[ASN][1000 genomes]
rs7127006	1.00[ASN][1000 genomes]
rs722747	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869952	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929530	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7933830	1.00[ASN][1000 genomes]
rs7936866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931774	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16302200-16321600	Weak transcription	Left Ventricle	heart
2	chr11:16313200-16319800	Enhancers	Fetal Heart	heart
3	chr11:16313400-16322200	Enhancers	Brain Germinal Matrix	brain
4	chr11:16314400-16319000	Weak transcription	Psoas Muscle	Psoas
5	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:16315400-16317800	Weak transcription	HSMMtube	muscle
7	chr11:16315400-16319000	Weak transcription	Fetal Lung	lung
8	chr11:16315400-16319400	Weak transcription	Small Intestine	intestine
9	chr11:16315600-16318800	Weak transcription	Fetal Brain Female	brain
10	chr11:16315600-16319000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:16315600-16321600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:16315600-16322200	Weak transcription	Fetal Kidney	kidney
13	chr11:16316800-16318200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:16317000-16318400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:16317000-16319000	Enhancers	K562	blood
16	chr11:16317000-16320000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:16317200-16318200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr11:16317200-16319400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:16317400-16317800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:16317400-16318200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:16317400-16327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links