Variant report

Variant	rs1827535
Chromosome Location	chr11:16380409-16380410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16377809..16381179-chr11:16381397..16386476,5	K562	blood:
2	chr11:16378328..16381212-chr11:16385744..16387907,4	K562	blood:
3	chr11:16378664..16381135-chr11:16398247..16400656,3	K562	blood:
4	chr11:16373265..16376492-chr11:16376738..16380719,5	K562	blood:
5	chr11:16368761..16370677-chr11:16378188..16383236,4	K562	blood:
6	chr11:16379429..16381172-chr11:16398247..16400946,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11023926	1.00[ASN][1000 genomes]
rs12417996	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12418276	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12418887	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12420134	1.00[ASN][1000 genomes]
rs12420808	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12791361	1.00[CHB][hapmap]
rs12800654	1.00[CHB][hapmap]
rs1437635	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16932966	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17461712	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17538814	1.00[CHB][hapmap]
rs17552977	1.00[CHB][hapmap]
rs17553733	1.00[ASN][1000 genomes]
rs1975299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2118362	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164783	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34281980	1.00[ASN][1000 genomes]
rs34866095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35603256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881739	1.00[ASN][1000 genomes]
rs61881740	1.00[ASN][1000 genomes]
rs61881741	1.00[ASN][1000 genomes]
rs61881743	1.00[ASN][1000 genomes]
rs61881745	1.00[ASN][1000 genomes]
rs61883178	1.00[ASN][1000 genomes]
rs61883179	1.00[ASN][1000 genomes]
rs61883180	1.00[ASN][1000 genomes]
rs61883181	1.00[ASN][1000 genomes]
rs61883182	1.00[ASN][1000 genomes]
rs61883184	1.00[ASN][1000 genomes]
rs61883185	1.00[ASN][1000 genomes]
rs61883187	1.00[ASN][1000 genomes]
rs61883197	1.00[ASN][1000 genomes]
rs7109139	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109376	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127006	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722747	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72869952	1.00[ASN][1000 genomes]
rs7929530	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7932056	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7933830	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936866	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs931774	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16377600-16381600	Enhancers	Fetal Heart	heart
2	chr11:16377600-16382200	Enhancers	Fetal Intestine Small	intestine
3	chr11:16378000-16381000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16378400-16381600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr11:16378600-16381200	Enhancers	HepG2	liver
6	chr11:16378800-16381200	Enhancers	Fetal Intestine Large	intestine
7	chr11:16379000-16387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:16379200-16381800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:16379200-16387400	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:16379400-16380800	Enhancers	Liver	Liver
11	chr11:16379400-16381400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:16379800-16386600	Weak transcription	Fetal Brain Female	brain
13	chr11:16380400-16380600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:16380400-16381600	Flanking Active TSS	K562	blood
15	chr11:16380400-16385400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:16380400-16387200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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