Variant report

Variant	rs35603256
Chromosome Location	chr11:16377044-16377045
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16373265..16376492-chr11:16376738..16380719,5	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11023926	1.00[ASN][1000 genomes]
rs12417996	1.00[ASN][1000 genomes]
rs12418276	1.00[ASN][1000 genomes]
rs12418887	1.00[ASN][1000 genomes]
rs12420134	1.00[ASN][1000 genomes]
rs12420808	1.00[ASN][1000 genomes]
rs1437635	1.00[ASN][1000 genomes]
rs16932966	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17461712	1.00[ASN][1000 genomes]
rs17553733	1.00[ASN][1000 genomes]
rs1827535	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975299	1.00[ASN][1000 genomes]
rs2118362	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2164783	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34281980	1.00[ASN][1000 genomes]
rs34866095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881739	1.00[ASN][1000 genomes]
rs61881740	1.00[ASN][1000 genomes]
rs61881741	1.00[ASN][1000 genomes]
rs61881743	1.00[ASN][1000 genomes]
rs61881745	1.00[ASN][1000 genomes]
rs61883178	1.00[ASN][1000 genomes]
rs61883179	1.00[ASN][1000 genomes]
rs61883180	1.00[ASN][1000 genomes]
rs61883181	1.00[ASN][1000 genomes]
rs61883182	1.00[ASN][1000 genomes]
rs61883184	1.00[ASN][1000 genomes]
rs61883185	1.00[ASN][1000 genomes]
rs61883187	1.00[ASN][1000 genomes]
rs61883197	1.00[ASN][1000 genomes]
rs7109139	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109376	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127006	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722747	1.00[ASN][1000 genomes]
rs72869952	1.00[ASN][1000 genomes]
rs7929530	1.00[ASN][1000 genomes]
rs7932056	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7933830	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936866	1.00[ASN][1000 genomes]
rs931774	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
2	chr11:16372200-16377400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:16374400-16377400	Enhancers	K562	blood
4	chr11:16374800-16377600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16375000-16377400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:16375200-16377600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16375200-16379000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:16375400-16377200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:16375400-16378800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:16375600-16378800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:16376200-16377400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:16376200-16378800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:16376200-16378800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:16376400-16377400	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr11:16376400-16377600	Weak transcription	Fetal Heart	heart
16	chr11:16376400-16378000	Active TSS	Brain Germinal Matrix	brain
17	chr11:16376400-16378000	Weak transcription	Fetal Brain Female	brain
18	chr11:16376400-16378200	Enhancers	HepG2	liver
19	chr11:16376600-16377600	Active TSS	Brain Anterior Caudate	brain
20	chr11:16376600-16377600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:16376600-16379200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr11:16377000-16377400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:16377000-16377400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:16377000-16378400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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