Variant report

Variant	rs34281980
Chromosome Location	chr11:16314414-16314415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16312136..16316108-chr11:16626360..16630242,4	K562	blood:
2	chr11:16299175..16301880-chr11:16312711..16315686,3	K562	blood:
3	chr11:16312308..16315200-chr11:16317482..16320293,3	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11023926	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12417996	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418276	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418887	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420134	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420808	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437635	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932966	1.00[ASN][1000 genomes]
rs17461712	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17552977	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17553733	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827535	1.00[ASN][1000 genomes]
rs1975299	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118362	1.00[ASN][1000 genomes]
rs34866095	1.00[ASN][1000 genomes]
rs35603256	1.00[ASN][1000 genomes]
rs61881739	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881740	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881741	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881743	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881745	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883178	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883179	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883180	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883181	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883182	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883184	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883185	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883187	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61883197	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109139	1.00[ASN][1000 genomes]
rs7109376	1.00[ASN][1000 genomes]
rs7127006	1.00[ASN][1000 genomes]
rs722747	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869952	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929530	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7933830	1.00[ASN][1000 genomes]
rs7936866	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931774	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16286800-16314800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16302200-16321600	Weak transcription	Left Ventricle	heart
3	chr11:16309600-16314800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:16309800-16314800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:16313200-16319800	Enhancers	Fetal Heart	heart
6	chr11:16313400-16315800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:16313400-16322200	Enhancers	Brain Germinal Matrix	brain
8	chr11:16313600-16315400	Bivalent Enhancer	Stomach Mucosa	stomach
9	chr11:16313800-16315400	Enhancers	Fetal Stomach	stomach
10	chr11:16314000-16315200	Enhancers	Fetal Intestine Large	intestine
11	chr11:16314000-16315400	Enhancers	Fetal Intestine Small	intestine
12	chr11:16314000-16315400	Enhancers	Fetal Lung	lung
13	chr11:16314000-16315400	Flanking Active TSS	K562	blood
14	chr11:16314200-16314800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:16314200-16315200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:16314200-16315200	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:16314200-16315400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:16314200-16315400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:16314200-16315400	Enhancers	Small Intestine	intestine
20	chr11:16314200-16315600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:16314200-16315600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:16314200-16315600	Enhancers	Fetal Kidney	kidney
23	chr11:16314200-16315600	Enhancers	Fetal Muscle Leg	muscle
24	chr11:16314400-16315200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:16314400-16319000	Weak transcription	Psoas Muscle	Psoas

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