Variant report

Variant	rs7929530
Chromosome Location	chr11:16381813-16381814
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16381508..16383531-chr11:16385796..16387434,2	K562	blood:
2	chr11:16377809..16381179-chr11:16381397..16386476,5	K562	blood:
3	chr11:16368761..16370677-chr11:16378188..16383236,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11023926	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417996	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12418276	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12418887	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12420134	1.00[ASN][1000 genomes]
rs12420808	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12791361	1.00[CHB][hapmap]
rs12800654	1.00[CHB][hapmap]
rs1437635	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16932966	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17461712	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17538814	1.00[CHB][hapmap]
rs17552977	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs17553733	0.87[CEU][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1827535	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1975299	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2118362	1.00[ASN][1000 genomes]
rs34281980	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34866095	1.00[ASN][1000 genomes]
rs35603256	1.00[ASN][1000 genomes]
rs61881739	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61881740	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61881741	1.00[ASN][1000 genomes]
rs61881743	1.00[ASN][1000 genomes]
rs61881745	1.00[ASN][1000 genomes]
rs61883178	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883179	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883180	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883181	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883182	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883184	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883185	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883187	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61883197	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7109139	1.00[ASN][1000 genomes]
rs7109376	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7127006	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs722747	1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72869952	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7933830	1.00[ASN][1000 genomes]
rs7936866	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs931774	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16377600-16382200	Enhancers	Fetal Intestine Small	intestine
2	chr11:16379000-16387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:16379200-16387400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:16379800-16386600	Weak transcription	Fetal Brain Female	brain
5	chr11:16380400-16385400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16380400-16387200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:16381000-16385000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16381400-16382000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:16381600-16384200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16381600-16385000	Weak transcription	Fetal Heart	heart
11	chr11:16381600-16386000	Enhancers	K562	blood
12	chr11:16381800-16383000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:16381800-16385000	Weak transcription	Fetal Intestine Large	intestine

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