Variant report

Variant	rs2177120
Chromosome Location	chr11:33703419-33703420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1009448	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032342	0.94[ASN][1000 genomes]
rs34446317	0.94[ASN][1000 genomes]
rs3818052	0.81[ASN][1000 genomes]
rs4142964	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4542380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61736869	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs752526	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33691000-33712400	Weak transcription	Psoas Muscle	Psoas
2	chr11:33691800-33704200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:33693800-33703800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:33694000-33713600	Weak transcription	Fetal Brain Female	brain
5	chr11:33694400-33704600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:33696400-33704000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:33696800-33703800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:33697600-33705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:33703400-33704600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:33703400-33704800	Enhancers	HMEC	breast
11	chr11:33703400-33706800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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