Variant report

Variant	rs4142964
Chromosome Location	chr11:33705172-33705173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33704113..33705752-chr11:33708233..33709911,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1009448	0.98[EUR][1000 genomes]
rs10501128	0.86[CHB][hapmap];0.84[CHD][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10768019	0.98[ASN][1000 genomes]
rs10768020	0.98[ASN][1000 genomes]
rs10768021	0.97[ASN][1000 genomes]
rs10836098	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10836100	0.97[ASN][1000 genomes]
rs11032341	0.98[ASN][1000 genomes]
rs11032343	0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs11032344	0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs1569764	0.96[ASN][1000 genomes]
rs2177120	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34565296	0.97[ASN][1000 genomes]
rs4356198	0.95[ASN][1000 genomes]
rs4542380	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61736869	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7127596	0.94[ASN][1000 genomes]
rs7928865	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33691000-33712400	Weak transcription	Psoas Muscle	Psoas
2	chr11:33694000-33713600	Weak transcription	Fetal Brain Female	brain
3	chr11:33697600-33705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:33703400-33706800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:33703600-33705200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:33703600-33705200	Enhancers	Esophagus	oesophagus
7	chr11:33703600-33705800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:33703800-33705200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:33703800-33706000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:33703800-33706000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:33703800-33706600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:33703800-33707000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:33704200-33706600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:33704200-33707000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:33704200-33711200	Weak transcription	Lung	lung
16	chr11:33704400-33705400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:33704400-33705400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:33704400-33705600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:33704400-33705800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:33704400-33706600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:33704400-33706800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:33704400-33712200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:33704600-33706000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:33704600-33706400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:33704600-33706600	Weak transcription	NHEK	skin
26	chr11:33704600-33706800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:33704800-33706000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:33704800-33706200	Enhancers	Brain Germinal Matrix	brain
29	chr11:33704800-33706600	Weak transcription	HMEC	breast
30	chr11:33705000-33705200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:33705000-33705200	Enhancers	Pancreas	Pancrea
32	chr11:33705000-33706200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr11:33705000-33706400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:33705000-33706600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links