Variant report

Variant	rs61736869
Chromosome Location	chr11:33689652-33689653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33689412..33692337-chr11:33694511..33696205,2	K562	blood:
2	chr11:33689243..33690846-chr11:33691492..33694193,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1009448	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10836098	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11032342	0.89[ASN][1000 genomes]
rs2177120	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34446317	0.89[ASN][1000 genomes]
rs3818052	0.83[ASN][1000 genomes]
rs4142964	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4542380	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752526	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33665800-33691600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:33674000-33689800	Weak transcription	NH-A	brain
3	chr11:33674000-33690800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:33674200-33690000	Weak transcription	Fetal Brain Male	brain
5	chr11:33674400-33690800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:33674400-33691400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:33674400-33691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:33674600-33690800	Weak transcription	Psoas Muscle	Psoas
9	chr11:33674800-33700000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:33676000-33690800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:33678800-33695400	Weak transcription	Brain Anterior Caudate	brain
12	chr11:33680000-33691400	Weak transcription	Osteobl	bone
13	chr11:33680400-33691600	Weak transcription	HSMMtube	muscle
14	chr11:33680400-33692000	Weak transcription	GM12878-XiMat	blood
15	chr11:33681000-33690400	Strong transcription	Fetal Brain Female	brain
16	chr11:33683800-33690000	Strong transcription	Brain Germinal Matrix	brain
17	chr11:33684000-33692000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:33685200-33697800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:33686000-33691400	Weak transcription	HUVEC	blood vessel
20	chr11:33686200-33692000	Weak transcription	Pancreas	Pancrea
21	chr11:33686800-33689800	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:33686800-33690800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:33687000-33689800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:33687000-33689800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:33687200-33689800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:33687400-33689800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:33687400-33690800	Weak transcription	Brain Substantia Nigra	brain
28	chr11:33687600-33691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:33687800-33690800	Weak transcription	Gastric	stomach
30	chr11:33688200-33690800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:33688400-33690400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:33689200-33689800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:33689200-33691200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:33689400-33689800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:33689400-33689800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:33689400-33689800	Enhancers	Esophagus	oesophagus
37	chr11:33689400-33690000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:33689400-33690000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:33689400-33690200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:33689400-33691200	Enhancers	H1 Cell Line	embryonic stem cell
41	chr11:33689400-33691200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:33689400-33691200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr11:33689400-33691200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:33689400-33691400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
45	chr11:33689400-33692800	Enhancers	Stomach Mucosa	stomach
46	chr11:33689400-33693000	Enhancers	NHEK	skin
47	chr11:33689400-33693800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:33689600-33689800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:33689600-33689800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:33689600-33690000	Enhancers	HUES48 Cell Line	embryonic stem cell

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