Variant report

Variant	rs2181223
Chromosome Location	chr1:47671323-47671324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1008455	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13373881	0.91[AFR][1000 genomes]
rs1419051	0.82[ASN][1000 genomes]
rs2249665	0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2758742	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2798349	0.85[CHB][hapmap]
rs2798355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2821083	0.83[ASN][1000 genomes]
rs2821084	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2821085	0.82[ASN][1000 genomes]
rs2821086	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47659000-47675800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:47664600-47676000	Weak transcription	K562	blood
3	chr1:47666600-47671600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:47668000-47673200	Weak transcription	HUVEC	blood vessel
5	chr1:47670800-47671400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links