Variant report

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1008455	0.82[ASN][1000 genomes]
rs11211477	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2070929	1.00[CEU][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2181222	0.90[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2181223	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2249636	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2250495	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2798355	0.80[ASN][1000 genomes]
rs2821083	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2821084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2821085	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821086	0.82[ASN][1000 genomes]
rs9436225	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1419051	STIL	cis	cerebellum	SCAN
rs1419051	KIAA0494	cis	cerebellum	SCAN
rs1419051	CYP4A11	cis	parietal	SCAN
rs1419051	BEST4	cis	cerebellum	SCAN
rs1419051	PDZK1IP1	cis	multi-tissue	Pritchard

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47673400-47677600	Enhancers	HMEC	breast
2	chr1:47674400-47677200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:47674400-47690600	Weak transcription	Gastric	stomach
4	chr1:47675000-47677200	Weak transcription	Spleen	Spleen
5	chr1:47675400-47680000	Enhancers	HUVEC	blood vessel
6	chr1:47675600-47677400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr1:47675800-47677400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:47675800-47680600	Enhancers	Primary hematopoietic stem cells	blood
9	chr1:47676000-47677800	Genic enhancers	K562	blood
10	chr1:47676000-47678200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:47676000-47678200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:47676200-47677200	Enhancers	Adipose Nuclei	Adipose
13	chr1:47676200-47677400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr1:47676400-47677200	Weak transcription	Lung	lung
15	chr1:47676400-47677400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:47676400-47677600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:47676400-47679600	Enhancers	Right Atrium	heart
18	chr1:47676600-47677600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
19	chr1:47676800-47679200	Enhancers	Left Ventricle	heart
20	chr1:47677000-47679200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: