Variant report

Variant	rs9436225
Chromosome Location	chr1:47705727-47705728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1419051	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2070929	0.87[EUR][1000 genomes]
rs2181222	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249636	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2250495	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2798349	0.81[ASN][1000 genomes]
rs2821083	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2821084	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2821085	0.88[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47702000-47705800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:47702200-47707000	Weak transcription	Placenta	Placenta
3	chr1:47704000-47706800	Weak transcription	HUVEC	blood vessel
4	chr1:47705000-47705800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:47705000-47705800	Enhancers	Fetal Thymus	thymus
6	chr1:47705200-47707000	Enhancers	K562	blood
7	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:47705600-47706800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:47705600-47706800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:47705600-47706800	Weak transcription	Lung	lung
11	chr1:47705600-47706800	Weak transcription	Spleen	Spleen
12	chr1:47705600-47707000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:47705600-47707000	Weak transcription	Hela-S3	cervix
14	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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