Variant report

Variant	rs2821085
Chromosome Location	chr1:47672288-47672289
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47668413..47671273-chr1:47671356..47673006,2	K562	blood:
2	chr1:47654942..47657353-chr1:47669625..47672570,2	K562	blood:
3	chr1:47660839..47662397-chr1:47671477..47673417,2	K562	blood:
4	chr1:47671072..47673717-chr1:47821797..47823695,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAL1-3	chr1:47670392-47672900	NONHSAT003062
2	lnc-TAL1-3	chr1:47670393-47672900	l_51_NR_026878

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1008455	0.82[ASN][1000 genomes]
rs11211477	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1419051	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181222	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2181223	0.82[ASN][1000 genomes]
rs2249636	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2250495	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2798355	0.80[ASN][1000 genomes]
rs2821083	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2821084	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2821086	0.82[ASN][1000 genomes]
rs9436225	0.88[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47659000-47675800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:47664600-47676000	Weak transcription	K562	blood
3	chr1:47668000-47673200	Weak transcription	HUVEC	blood vessel
4	chr1:47671400-47674600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:47671600-47673800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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