Variant report

Variant	rs2250495
Chromosome Location	chr1:47693377-47693378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11211482	0.89[AFR][1000 genomes]
rs12083555	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1419051	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1810658	0.88[AFR][1000 genomes]
rs2070929	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2181222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249636	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249665	0.81[ASN][1000 genomes]
rs2250380	0.84[ASN][1000 genomes]
rs2798349	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2821083	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2821084	0.90[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2821085	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs741958	0.84[ASN][1000 genomes]
rs9436225	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47689800-47696600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:47690000-47697600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:47690200-47696800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr1:47690400-47693600	Enhancers	Spleen	Spleen
5	chr1:47691000-47694400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:47691600-47694400	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr1:47691600-47694800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:47691800-47695200	Weak transcription	Pancreas	Pancrea
9	chr1:47691800-47695600	Flanking Active TSS	HUVEC	blood vessel
10	chr1:47692000-47693800	Transcr. at gene 5' and 3'	K562	blood
11	chr1:47692200-47693800	Bivalent Enhancer	Left Ventricle	heart
12	chr1:47692200-47694200	Bivalent Enhancer	Adipose Nuclei	Adipose
13	chr1:47692200-47694400	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:47692400-47693400	Enhancers	Right Atrium	heart
15	chr1:47692400-47696600	Weak transcription	Gastric	stomach
16	chr1:47692600-47693800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr1:47692600-47694200	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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