Variant report

Variant	rs2249636
Chromosome Location	chr1:47686533-47686534
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12083555	0.94[ASW][hapmap];0.81[GIH][hapmap]
rs1419051	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2070929	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2181222	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249665	0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2250495	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2758742	0.82[ASN][1000 genomes]
rs2798349	0.84[JPT][hapmap]
rs2821083	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2821084	0.95[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2821085	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9436225	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2249636	KIAA0494	cis	cerebellum	SCAN
rs2249636	CYP4A11	cis	parietal	SCAN
rs2249636	BEST4	cis	cerebellum	SCAN
rs2249636	STIL	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47679200-47687000	Weak transcription	Adipose Nuclei	Adipose
3	chr1:47679200-47689400	Weak transcription	Lung	lung
4	chr1:47679600-47689000	Weak transcription	Right Atrium	heart
5	chr1:47681800-47689600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:47683600-47690000	Strong transcription	K562	blood
7	chr1:47683800-47690000	Strong transcription	HUVEC	blood vessel
8	chr1:47684600-47687400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:47684800-47687800	Strong transcription	Spleen	Spleen
10	chr1:47685000-47688000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:47685800-47687600	Strong transcription	Primary hematopoietic stem cells	blood
12	chr1:47686400-47690600	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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