Variant report
| Variant | rs2189264 |
|---|---|
| Chromosome Location | chr8:91262502-91262503 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:91261281..91262895-chr8:91264696..91267633,2 | MCF-7 | breast: | |
| 2 | chr8:91262047..91264019-chr8:91282938..91285265,2 | K562 | blood: | |
| 3 | chr8:91261905..91264801-chr8:91275540..91277572,2 | K562 | blood: | |
| 4 | chr8:91247048..91249501-chr8:91258376..91262700,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10102323 | 0.81[EUR][1000 genomes] |
| rs10504892 | 0.84[EUR][1000 genomes] |
| rs10808584 | 0.84[EUR][1000 genomes] |
| rs10956507 | 0.82[EUR][1000 genomes] |
| rs1155031 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12676309 | 0.84[EUR][1000 genomes] |
| rs12676331 | 0.84[EUR][1000 genomes] |
| rs12681542 | 0.84[EUR][1000 genomes] |
| rs2021728 | 0.85[ASN][1000 genomes] |
| rs2107073 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2189262 | 0.82[ASN][1000 genomes] |
| rs2214418 | 0.93[ASN][1000 genomes] |
| rs2339111 | 0.81[EUR][1000 genomes] |
| rs4735384 | 0.81[EUR][1000 genomes] |
| rs5020366 | 0.93[ASN][1000 genomes] |
| rs58516164 | 0.84[EUR][1000 genomes] |
| rs760280 | 0.81[EUR][1000 genomes] |
| rs7818663 | 0.85[EUR][1000 genomes] |
| rs7819285 | 0.85[EUR][1000 genomes] |
| rs7823556 | 0.85[EUR][1000 genomes] |
| rs7826868 | 0.81[EUR][1000 genomes] |
| rs7828848 | 0.81[EUR][1000 genomes] |
| rs9297813 | 0.93[ASN][1000 genomes] |
| rs978070 | 0.85[ASN][1000 genomes] |
| rs983139 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758164 | chr8:91000786-91329669 | Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2759628 | chr8:91000786-91329669 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:91257000-91265800 | Strong transcription | K562 | blood |
