Variant report

Variant	rs2021728
Chromosome Location	chr8:91252346-91252347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91235807..91240613-chr8:91250967..91255237,5	K562	blood:
2	chr8:91248190..91250217-chr8:91251459..91253736,3	MCF-7	breast:
3	chr8:91250919..91253356-chr8:91253452..91256356,4	K562	blood:
4	chr8:91022020..91023548-chr8:91252293..91254281,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10106513	0.88[ASN][1000 genomes]
rs10111402	0.91[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs10113268	0.82[ASN][1000 genomes]
rs10956509	0.83[ASN][1000 genomes]
rs10956510	0.84[ASN][1000 genomes]
rs1155031	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12546672	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12679792	0.83[ASN][1000 genomes]
rs2107073	0.86[ASN][1000 genomes]
rs2189260	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs2189262	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2189263	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2189264	0.85[ASN][1000 genomes]
rs2214418	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28461789	0.83[ASN][1000 genomes]
rs4577996	0.91[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs4961178	0.85[ASN][1000 genomes]
rs4961179	0.83[ASN][1000 genomes]
rs4961180	0.83[ASN][1000 genomes]
rs4961181	0.83[ASN][1000 genomes]
rs4961182	0.83[ASN][1000 genomes]
rs4961183	0.81[ASN][1000 genomes]
rs4961184	0.83[ASN][1000 genomes]
rs5020366	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7010298	0.83[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7815299	0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7815353	0.83[ASN][1000 genomes]
rs7819285	0.83[ASN][1000 genomes]
rs7823556	0.90[CHD][hapmap]
rs7831194	0.85[ASN][1000 genomes]
rs7842059	0.90[ASN][1000 genomes]
rs9297813	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643253	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs978070	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983139	0.90[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91252200-91252600	Strong transcription	K562	blood

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