Variant report

Variant	rs7842059
Chromosome Location	chr8:91239126-91239127
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91143606..91145604-chr8:91237948..91239469,2	K562	blood:
2	chr8:91179428..91181917-chr8:91237030..91239652,3	K562	blood:
3	chr8:91235807..91240613-chr8:91250967..91255237,5	K562	blood:
4	chr8:91210550..91212657-chr8:91237751..91239928,2	K562	blood:
5	chr8:91228314..91231823-chr8:91238061..91241526,6	K562	blood:
6	chr8:91237101..91239532-chr8:91255640..91258349,3	K562	blood:
7	chr8:91227850..91231823-chr8:91238006..91241292,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10106513	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10111402	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10113268	0.88[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs10808584	0.82[ASN][1000 genomes]
rs10956509	0.93[ASN][1000 genomes]
rs10956510	0.94[ASN][1000 genomes]
rs1155031	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12546672	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679792	0.93[ASN][1000 genomes]
rs2021728	0.90[ASN][1000 genomes]
rs2107073	0.96[ASN][1000 genomes]
rs2189260	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2189262	0.87[ASN][1000 genomes]
rs2189263	0.80[ASN][1000 genomes]
rs2214418	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2339110	0.83[AMR][1000 genomes]
rs28461789	0.93[ASN][1000 genomes]
rs34676253	0.87[ASN][1000 genomes]
rs4577996	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4961178	0.95[ASN][1000 genomes]
rs4961179	0.93[ASN][1000 genomes]
rs4961180	0.93[ASN][1000 genomes]
rs4961181	0.93[ASN][1000 genomes]
rs4961182	0.93[ASN][1000 genomes]
rs4961183	0.91[ASN][1000 genomes]
rs4961184	0.93[ASN][1000 genomes]
rs5020366	0.82[ASN][1000 genomes]
rs7010298	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7815299	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7815353	0.93[ASN][1000 genomes]
rs7818663	0.85[ASN][1000 genomes]
rs7819285	0.93[ASN][1000 genomes]
rs7823556	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs7831194	0.95[ASN][1000 genomes]
rs9297813	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9643253	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs978070	0.90[ASN][1000 genomes]
rs983139	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91235600-91240000	Transcr. at gene 5' and 3'	K562	blood
2	chr8:91237000-91240600	Weak transcription	Hela-S3	cervix

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