Variant report

Variant	rs9297813
Chromosome Location	chr8:91258647-91258648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91010957..91014069-chr8:91255866..91259257,5	MCF-7	breast:
2	chr8:91017521..91019447-chr8:91254781..91258818,3	MCF-7	breast:
3	chr8:91242047..91244608-chr8:91257106..91259132,2	K562	blood:
4	chr8:91247048..91249501-chr8:91258376..91262700,4	K562	blood:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10106513	0.80[ASN][1000 genomes]
rs10111402	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10113268	0.88[CHB][hapmap]
rs1155031	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12546672	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2021728	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2189260	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2189262	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2189263	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2189264	0.93[ASN][1000 genomes]
rs2214418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339110	0.82[AMR][1000 genomes]
rs4577996	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5020366	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010298	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap]
rs7815299	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs7823556	0.88[CHB][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs7842059	0.82[ASN][1000 genomes]
rs9643253	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs978070	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs983139	0.94[CHB][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9297813	RUNX1T1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91257000-91265800	Strong transcription	K562	blood

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