Variant report

Variant	rs10106513
Chromosome Location	chr8:91224761-91224762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10111402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113268	0.88[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs10808584	0.84[ASN][1000 genomes]
rs10956509	0.95[ASN][1000 genomes]
rs10956510	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1155031	0.86[ASN][1000 genomes]
rs12546672	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12679792	0.95[ASN][1000 genomes]
rs2021728	0.88[ASN][1000 genomes]
rs2107073	0.98[ASN][1000 genomes]
rs2189260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2189262	0.85[ASN][1000 genomes]
rs2214418	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs28461789	0.95[ASN][1000 genomes]
rs34676253	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4577996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961178	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961179	0.95[ASN][1000 genomes]
rs4961180	0.95[ASN][1000 genomes]
rs4961181	0.95[ASN][1000 genomes]
rs4961182	0.95[ASN][1000 genomes]
rs4961183	0.93[ASN][1000 genomes]
rs4961184	0.95[ASN][1000 genomes]
rs5020366	0.80[ASN][1000 genomes]
rs7010298	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815353	0.95[ASN][1000 genomes]
rs7818663	0.87[ASN][1000 genomes]
rs7819285	0.95[ASN][1000 genomes]
rs7823556	0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs7831194	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7836997	0.81[EUR][1000 genomes]
rs7842059	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297813	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs9643253	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs978070	0.88[ASN][1000 genomes]
rs983139	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91224000-91225200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:91224200-91225400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:91224200-91225600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:91224200-91225800	Weak transcription	K562	blood
5	chr8:91224400-91225400	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links