Variant report

Variant	rs4961179
Chromosome Location	chr8:91210191-91210192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91209392..91211904-chr8:91213092..91216334,3	K562	blood:
2	chr8:91208689..91211552-chr8:91212511..91216609,5	K562	blood:
3	chr8:91210166..91212699-chr8:91233871..91237591,3	K562	blood:
4	chr8:91208757..91210892-chr8:91218226..91220582,2	K562	blood:
5	chr8:91208628..91210312-chr8:91239266..91240795,2	K562	blood:
6	chr8:91197950..91200166-chr8:91210110..91212853,2	K562	blood:
7	chr8:91208888..91210489-chr8:91226599..91229382,2	K562	blood:
8	chr8:90991149..90993502-chr8:91207366..91210281,2	K562	blood:
9	chr8:91207044..91210489-chr8:91227882..91229931,3	K562	blood:
10	chr8:91204870..91208091-chr8:91210126..91212391,3	K562	blood:
11	chr8:91209932..91211490-chr8:91214820..91216543,2	MCF-7	breast:

No data

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10088090	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10096924	0.81[AFR][1000 genomes]
rs10102323	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10106513	0.95[ASN][1000 genomes]
rs10111402	0.94[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10113268	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10504892	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10808584	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956507	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956509	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956510	0.97[ASN][1000 genomes]
rs1155031	0.81[ASN][1000 genomes]
rs12546672	0.92[ASN][1000 genomes]
rs12676309	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12676331	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12679792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681542	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2021728	0.83[ASN][1000 genomes]
rs2107073	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2158222	0.86[LWK][hapmap]
rs2189260	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2189262	0.80[ASN][1000 genomes]
rs2214418	0.94[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs2339109	0.86[LWK][hapmap]
rs28461789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34676253	0.90[ASN][1000 genomes]
rs4577996	0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap];0.95[ASN][1000 genomes]
rs4961178	0.98[ASN][1000 genomes]
rs4961180	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961183	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4961184	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58516164	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7010298	0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap];0.98[ASN][1000 genomes]
rs7815299	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7815353	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818663	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7819285	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823556	1.00[ASW][hapmap];0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7828848	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7831194	0.98[ASN][1000 genomes]
rs7842059	0.93[ASN][1000 genomes]
rs7842660	0.81[AFR][1000 genomes]
rs9297813	0.94[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs9643253	0.90[ASN][1000 genomes]
rs978070	0.83[ASN][1000 genomes]
rs983139	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4961179	RUNX1T1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91209600-91210200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:91209800-91210200	Enhancers	Hela-S3	cervix
3	chr8:91209800-91210400	Flanking Active TSS	K562	blood

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