Variant report

Variant	rs7842660
Chromosome Location	chr8:91209359-91209360
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91208689..91211552-chr8:91212511..91216609,5	K562	blood:
2	chr8:91208757..91210892-chr8:91218226..91220582,2	K562	blood:
3	chr8:91208628..91210312-chr8:91239266..91240795,2	K562	blood:
4	chr8:91208888..91210489-chr8:91226599..91229382,2	K562	blood:
5	chr8:91207984..91210064-chr8:92047813..92050741,2	K562	blood:
6	chr8:90991149..90993502-chr8:91207366..91210281,2	K562	blood:
7	chr8:91207044..91210489-chr8:91227882..91229931,3	K562	blood:
8	chr8:91207463..91209619-chr8:91232587..91235024,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253394	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10086980	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10096924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679473	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12679792	0.81[AFR][1000 genomes]
rs12679936	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12681301	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682044	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13253603	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13275049	0.87[ASN][1000 genomes]
rs13276534	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13439055	0.83[ASN][1000 genomes]
rs16904163	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2056839	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2056840	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2158222	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2189258	0.93[ASN][1000 genomes]
rs2339108	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2339109	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28461789	0.81[AFR][1000 genomes]
rs28465357	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs33958462	0.81[EUR][1000 genomes]
rs4961179	0.81[AFR][1000 genomes]
rs4961181	0.81[AFR][1000 genomes]
rs4961182	0.81[AFR][1000 genomes]
rs62530359	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67438267	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9642892	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643256	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643257	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs968950	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91209200-91209400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:91209200-91209800	Active TSS	K562	blood

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