Variant report

Variant	rs12679473
Chromosome Location	chr8:91203075-91203076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10086980	0.87[EUR][1000 genomes]
rs10096924	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12675946	0.88[ASN][1000 genomes]
rs12679936	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12681301	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12681563	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12682044	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13253603	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13276534	0.87[EUR][1000 genomes]
rs13439055	0.85[EUR][1000 genomes]
rs16893256	0.89[ASN][1000 genomes]
rs16904163	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2056839	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2056840	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2158222	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2339108	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2339109	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28465357	0.87[EUR][1000 genomes]
rs2879344	0.80[EUR][1000 genomes]
rs33958462	0.87[EUR][1000 genomes]
rs62530359	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67438267	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7842660	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9642892	0.87[EUR][1000 genomes]
rs9643256	0.87[EUR][1000 genomes]
rs9643257	0.87[EUR][1000 genomes]
rs968950	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91202600-91204800	Weak transcription	K562	blood

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