Variant report

Variant	rs12681301
Chromosome Location	chr8:91236199-91236200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91012457..91015215-chr8:91233847..91236431,2	K562	blood:
2	chr8:91176914..91178549-chr8:91234676..91237074,2	K562	blood:
3	chr8:91235807..91240613-chr8:91250967..91255237,5	K562	blood:
4	chr8:91012457..91016466-chr8:91233540..91237741,4	K562	blood:
5	chr8:91077672..91080611-chr8:91234474..91236679,2	K562	blood:
6	chr8:91210166..91212699-chr8:91233871..91237591,3	K562	blood:
7	chr8:91234288..91238197-chr8:91246865..91250561,3	K562	blood:
8	chr8:91231929..91234339-chr8:91235347..91237147,2	K562	blood:
9	chr8:91012660..91015157-chr8:91235154..91237814,2	MCF-7	breast:
10	chr8:91079623..91081768-chr8:91235463..91237230,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction
ENSG00000104325	Chromatin interaction
ENSG00000253394	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10086980	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10096924	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12679473	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12679936	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681563	0.86[EUR][1000 genomes]
rs12682044	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13253603	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275049	0.95[ASN][1000 genomes]
rs13276534	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13439055	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16904163	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2056839	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056840	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158222	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2189258	0.95[ASN][1000 genomes]
rs2339108	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339109	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28465357	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2879344	0.82[EUR][1000 genomes]
rs33958462	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62530359	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67438267	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7842660	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9642892	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643256	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643257	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs968950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91228400-91236800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:91229600-91238600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91232400-91236400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:91235600-91240000	Transcr. at gene 5' and 3'	K562	blood

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