Variant report

Variant	rs9643256
Chromosome Location	chr8:91256924-91256925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91010957..91014069-chr8:91255866..91259257,5	MCF-7	breast:
2	chr8:91017521..91019447-chr8:91254781..91258818,3	MCF-7	breast:
3	chr8:91012148..91013832-chr8:91256336..91257759,13	MCF-7	breast:
4	chr8:91237101..91239532-chr8:91255640..91258349,3	K562	blood:
5	chr8:91249836..91251635-chr8:91254921..91257307,2	MCF-7	breast:
6	chr8:91012783..91013986-chr8:91256750..91257847,6	K562	blood:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10086980	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096924	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12676897	0.90[EUR][1000 genomes]
rs12679473	0.87[EUR][1000 genomes]
rs12679936	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12681301	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12682044	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13253603	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13275049	0.89[ASN][1000 genomes]
rs13276534	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13439055	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16904163	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2056839	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2056840	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2158222	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2189258	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs2339108	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2339109	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28465357	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879344	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs33958462	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62530359	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62532282	0.83[EUR][1000 genomes]
rs7842660	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9642892	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643257	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968950	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91256400-91257000	Enhancers	Brain Substantia Nigra	brain
2	chr8:91256600-91257000	Genic enhancers	K562	blood

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