Variant report

Variant	rs13439055
Chromosome Location	chr8:91247197-91247198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91234288..91238197-chr8:91246865..91250561,3	K562	blood:
2	chr8:91011585..91013133-chr8:91244828..91247817,2	K562	blood:
3	chr8:91012600..91015101-chr8:91246944..91248710,2	MCF-7	breast:
4	chr8:91247048..91249501-chr8:91258376..91262700,4	K562	blood:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10086980	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10096924	0.83[ASN][1000 genomes]
rs12676897	0.87[EUR][1000 genomes]
rs12679473	0.85[EUR][1000 genomes]
rs12679936	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12681301	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12682044	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13253603	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13275049	0.90[ASN][1000 genomes]
rs13276534	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16904163	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2056839	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2056840	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2158222	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2189258	0.84[ASN][1000 genomes]
rs2339108	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2339109	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28465357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2879344	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs33958462	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62530359	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62532282	0.81[EUR][1000 genomes]
rs7842660	0.83[ASN][1000 genomes]
rs9642892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643256	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9643257	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs968950	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91243800-91248000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:91246800-91247200	Strong transcription	K562	blood

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