Variant report

Variant	rs13275049
Chromosome Location	chr8:91241728-91241729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10086980	0.89[ASN][1000 genomes]
rs10096924	0.87[ASN][1000 genomes]
rs10956539	0.84[EUR][1000 genomes]
rs11774684	0.84[EUR][1000 genomes]
rs11784496	0.83[EUR][1000 genomes]
rs11992744	0.84[EUR][1000 genomes]
rs12679936	0.95[ASN][1000 genomes]
rs12681301	0.95[ASN][1000 genomes]
rs12682044	0.95[ASN][1000 genomes]
rs13253603	0.95[ASN][1000 genomes]
rs13276534	0.90[ASN][1000 genomes]
rs13439055	0.90[ASN][1000 genomes]
rs16904163	0.98[ASN][1000 genomes]
rs2056839	0.95[ASN][1000 genomes]
rs2056840	0.95[ASN][1000 genomes]
rs2158222	0.98[ASN][1000 genomes]
rs2189258	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2339108	0.95[ASN][1000 genomes]
rs2339109	0.98[ASN][1000 genomes]
rs28465357	0.89[ASN][1000 genomes]
rs33958462	0.85[ASN][1000 genomes]
rs34377035	0.84[EUR][1000 genomes]
rs34933562	0.84[EUR][1000 genomes]
rs35062791	0.84[EUR][1000 genomes]
rs35546559	0.84[EUR][1000 genomes]
rs55673726	0.83[EUR][1000 genomes]
rs56074279	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62530359	0.98[ASN][1000 genomes]
rs67438267	0.80[ASN][1000 genomes]
rs7009494	0.83[EUR][1000 genomes]
rs7842660	0.87[ASN][1000 genomes]
rs9642892	0.90[ASN][1000 genomes]
rs9643256	0.89[ASN][1000 genomes]
rs9643257	0.89[ASN][1000 genomes]
rs968950	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91240000-91242000	Genic enhancers	K562	blood
2	chr8:91240200-91244200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:91240600-91244800	Enhancers	Hela-S3	cervix
4	chr8:91241200-91243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:91241400-91243400	Weak transcription	HMEC	breast
6	chr8:91241400-91243400	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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