Variant report

Variant	rs7010298
Chromosome Location	chr8:91208807-91208808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91195100..91196918-chr8:91207528..91209221,2	K562	blood:
2	chr8:91208689..91211552-chr8:91212511..91216609,5	K562	blood:
3	chr8:91208757..91210892-chr8:91218226..91220582,2	K562	blood:
4	chr8:91208628..91210312-chr8:91239266..91240795,2	K562	blood:
5	chr8:91207984..91210064-chr8:92047813..92050741,2	K562	blood:
6	chr8:90991149..90993502-chr8:91207366..91210281,2	K562	blood:
7	chr8:91207044..91210489-chr8:91227882..91229931,3	K562	blood:
8	chr8:91207463..91209619-chr8:91232587..91235024,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253394	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10106513	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10111402	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10113268	0.88[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs10808584	0.85[ASN][1000 genomes]
rs10956507	0.81[ASN][1000 genomes]
rs10956509	0.98[ASN][1000 genomes]
rs10956510	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1155031	0.83[ASN][1000 genomes]
rs12546672	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679792	0.98[ASN][1000 genomes]
rs2021728	0.85[ASN][1000 genomes]
rs2107073	0.95[ASN][1000 genomes]
rs2189260	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2189262	0.82[ASN][1000 genomes]
rs2214418	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap]
rs28461789	0.98[ASN][1000 genomes]
rs34676253	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4577996	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961178	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961179	0.98[ASN][1000 genomes]
rs4961180	0.98[ASN][1000 genomes]
rs4961181	0.98[ASN][1000 genomes]
rs4961182	0.98[ASN][1000 genomes]
rs4961183	0.96[ASN][1000 genomes]
rs4961184	0.98[ASN][1000 genomes]
rs7815299	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815353	0.98[ASN][1000 genomes]
rs7818663	0.89[ASN][1000 genomes]
rs7819285	0.98[ASN][1000 genomes]
rs7823556	0.88[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.89[ASN][1000 genomes]
rs7831194	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842059	0.95[ASN][1000 genomes]
rs9297813	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap]
rs9643253	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9650107	0.81[EUR][1000 genomes]
rs978070	0.85[ASN][1000 genomes]
rs983139	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7010298	RUNX1T1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91208600-91209200	Flanking Active TSS	K562	blood
2	chr8:91208800-91209000	Enhancers	Ovary	ovary
3	chr8:91208800-91209200	Enhancers	NH-A	brain

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