Variant report

Variant	rs10111402
Chromosome Location	chr8:91235642-91235643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91012457..91015215-chr8:91233847..91236431,2	K562	blood:
2	chr8:91176914..91178549-chr8:91234676..91237074,2	K562	blood:
3	chr8:91121306..91123004-chr8:91234013..91235686,2	K562	blood:
4	chr8:91012457..91016466-chr8:91233540..91237741,4	K562	blood:
5	chr8:91077672..91080611-chr8:91234474..91236679,2	K562	blood:
6	chr8:91210166..91212699-chr8:91233871..91237591,3	K562	blood:
7	chr8:91234288..91238197-chr8:91246865..91250561,3	K562	blood:
8	chr8:91231929..91234339-chr8:91235347..91237147,2	K562	blood:
9	chr8:91012660..91015157-chr8:91235154..91237814,2	MCF-7	breast:
10	chr8:91079623..91081768-chr8:91235463..91237230,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253394	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10106513	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113268	0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10808584	0.84[ASN][1000 genomes]
rs10956509	0.95[ASN][1000 genomes]
rs10956510	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1155031	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12546672	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12679792	0.95[ASN][1000 genomes]
rs2021728	0.88[ASN][1000 genomes]
rs2107073	0.98[ASN][1000 genomes]
rs2189260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2189262	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2214418	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28461789	0.95[ASN][1000 genomes]
rs34676253	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4577996	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961178	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961179	0.95[ASN][1000 genomes]
rs4961180	0.95[ASN][1000 genomes]
rs4961181	0.95[ASN][1000 genomes]
rs4961182	0.95[ASN][1000 genomes]
rs4961183	0.93[ASN][1000 genomes]
rs4961184	0.95[ASN][1000 genomes]
rs5020366	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7010298	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815353	0.95[ASN][1000 genomes]
rs7818663	0.87[ASN][1000 genomes]
rs7819285	0.95[ASN][1000 genomes]
rs7823556	0.88[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.87[ASN][1000 genomes]
rs7831194	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7836997	0.82[EUR][1000 genomes]
rs7842059	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297813	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9643253	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs978070	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs983139	0.94[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91228400-91236800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:91229600-91238600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91232400-91236400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:91235600-91240000	Transcr. at gene 5' and 3'	K562	blood

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